NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187863_10036486

Scaffold Ga0187863_10036486


Overview

Basic Information
Taxon OID3300018034 Open in IMG/M
Scaffold IDGa0187863_10036486 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2873
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002094Metagenome / Metatranscriptome594Y
F026659Metagenome / Metatranscriptome197Y
F038838Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0187863_100364861F002094N/ARPPLSEPSPTGLELTPGDRVEGLGNFGKPTGELGTVQQTNDDDALVKWDDDGRTRLQQLRLRKTSKQGSRLAKSGVVPQS
Ga0187863_100364863F026659GAGMKKTERSNCRFTVEQAGGKPFLAVQLFHDTIPLLNGALLGFDLLGGISVEKAKKLAEILNEHVLELFVTTSAKSGGLG
Ga0187863_100364864F038838GAGMRRLRPQAPIIMLSAAVDVPEQALKLVDAFIAKDHLSSQLLPMIAHLHGCNANPSVSYDA
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