NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187863_10053918

Scaffold Ga0187863_10053918


Overview

Basic Information
Taxon OID3300018034 Open in IMG/M
Scaffold IDGa0187863_10053918 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2295
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006203Metagenome / Metatranscriptome379Y
F011101Metagenome / Metatranscriptome295Y
F011163Metagenome / Metatranscriptome294Y
F052105Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0187863_100539183F011163AGGVGFGMEILFLLLLGLLVLGPKRLHSMLAYAAKAKAELENATRGLKSQLAAELDAARLSGETDCSHVLVGDCQLCSTFESVAELSEPPQG
Ga0187863_100539184F006203AGGAMLESIVGLLVGLFVSALILLIGSCIIGSIFVALRSVSRGS
Ga0187863_100539185F011101AGGAMNYRAITFASAAFFITSLALASDTWVLDSARSNARLFQGSRTNSESVNTGVAGVTGKVKLDTNDLDSSFVNLSIYPADEEWRHALSPDGALPPGYVPDSTDHILLTFNSSRILRTVDGKLEVIGDLTLTRVERTVTATPTEAYSGPVYGDPVLHNETREITFLFPSASAARFSESLTPTVQQTRGVLEVMGAARVDHEEFPELLSAIQDTNWPSVVRNEHCEAAYEGGGEGYSGPVCTGTLIAATHADNCQAAYEGGGEGYSGSVCTPPLGNQTTIVLDLKFLHKVPEPSVGMVSRKGET
Ga0187863_100539186F052105N/AMAIIPTIVAGAVFVTLAAANVVVMLEASQPSHNGTTRSRLIAIHRAGGYMF
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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