NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187863_10322543

Scaffold Ga0187863_10322543


Overview

Basic Information
Taxon OID3300018034 Open in IMG/M
Scaffold IDGa0187863_10322543 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)859
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003186Metagenome / Metatranscriptome502N
F023143Metagenome / Metatranscriptome211Y
F070324Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0187863_103225431F003186GGAGMINPKAILGEWVTALRSCPDLVTAIGGDGNNIRPFMEGLADHNNLRLAILQMPPGSILVAWNGTTPRRLTGGALHFAHRFSIYLRAPEQNSTATYADLFWLLVSAIPAGAPSWSSLLHFQIDPDCYPMDLDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0187863_103225432F023143AGGAGMDWVFMESPTGEVKEVEATAAALTPLMVAGWRQVPAPAATGPKPAAPVEEKK
Ga0187863_103225433F070324AGGAGMANVNELMNGWGFGKQTAIGTANASTAIWRHTNLNTRPWAK
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