NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187875_10080276

Scaffold Ga0187875_10080276


Overview

Basic Information
Taxon OID3300018035 Open in IMG/M
Scaffold IDGa0187875_10080276 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1871
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005822Metagenome / Metatranscriptome389Y
F014867Metagenome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0187875_100802763F014867GAGGMRLLFPSSYDRADLLMSAGCCTFVSAALIVVIPRLGILLLELLLGLFFIGCALAARKRLRRQARAKDGSDKAKDARTRRLDRYDVFMILAVILVQTSAAGSLRRAGLSEGTVGILPLFLFAAGILLKPRAVEFIEARRKNKQDGRGSTNAASLDSAVAAPVPASETQAQAVVRAAAQNGDLE
Ga0187875_100802764F005822GGAGMKSSEQTIASTGPEAIADSKSAQPPAGEGKRARAVRDSQATLPRSAATRRRRIRHDNSEAAGEERFFLASGSGNGNVPALGRECGSEAEAIIDAFRERVNFYTVSEFQTRADVG
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