NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187875_10305233

Scaffold Ga0187875_10305233


Overview

Basic Information
Taxon OID3300018035 Open in IMG/M
Scaffold IDGa0187875_10305233 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)860
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F038518Metagenome165N

Sequences

Protein IDFamilyRBSSequence
Ga0187875_103052332F003764GAGMQIQLDSPYIHDENPAALLAGAEIEAAGLHRCLKIVRLWSQSSALPRLRREEIIEEEQRLASLYAAILFEIGSAFGIEQADELKVRIESACILDDWECPPAEQGLLFPIPNDPTTEASPTTARK
Ga0187875_103052333F038518N/ADTLRKQLATAQADLEDVDYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPCEEPVYRFGSYPVKVLRWIRHLIFTLNAERRDVLSAIADLEPKVAALSQIIGNAIQ
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