NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187883_10114681

Scaffold Ga0187883_10114681


Overview

Basic Information
Taxon OID3300018037 Open in IMG/M
Scaffold IDGa0187883_10114681 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1395
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007233Metagenome / Metatranscriptome355Y
F015917Metagenome / Metatranscriptome251Y
F033134Metagenome178Y
F037842Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0187883_101146811F037842AGGAGGLKQKTVKARGEGVEYPALISKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIAFSIDPELSTVKGGNIVRWRQL
Ga0187883_101146812F033134AGGAMKQEQESKQLITFNSLHIEVLGPKELGNSQLAIRGVTEFLHGVELDVRRLLRERAEVSPILEGFRLRFG
Ga0187883_101146813F007233GGAGMANRKQKERKRQLNLDTFSDGIKGRVLEAVSISNELECRYISLEFEDKTELTITLDTRLTGKLELFDCKTGDHRLVRKIGLIPDDAPVWRPKD
Ga0187883_101146814F015917N/AGNITVTQISPKEREILAQKIKKRHNRLRNRYREIHKKVVDWVSHSVEEGNVYVCIRFMDKTEFSLQFSPQILTDGIDLSDMSTGNFKLIREYYRRRDE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.