Basic Information | |
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Taxon OID | 3300018038 Open in IMG/M |
Scaffold ID | Ga0187855_10112120 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1642 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F005822 | Metagenome / Metatranscriptome | 389 | Y |
F011771 | Metagenome / Metatranscriptome | 287 | Y |
F014867 | Metagenome | 259 | Y |
F066496 | Metagenome / Metatranscriptome | 126 | N |
Protein ID | Family | RBS | Sequence |
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Ga0187855_101121201 | F066496 | AGGAG | MSERNQIVVVLIVALMLGAFVDRSTALKIVAGVALLWTLQNQPTVFE |
Ga0187855_101121202 | F005822 | GGAG | MKVSEQPNAVNGAESIADSKIAHPPASEGRRSRAVTNSKPTLPRNATRRRRNRQDNSETSGEERFFLASGGGDGAVPALGRECGSEAEAIIDAFRERVNFYRLSEFQTRADVGPSGEPILRKDGLKKDNPAS |
Ga0187855_101121203 | F014867 | GAGG | MRTLFPSSYDRADVLMSAGCSTFVSAALILVIPRFGILLLEILLGLFFIGCALVARKRLRTQALGQDSSDKSRDARTRWFDRYDVFMILAVVVVQTSTAGLLRKAGLAEGTVGILPLFLFAAGILLKPRAVEFIEGRRKTRQASRNGNNLTDFAAHAPASEAGTKTVVHAATKNGDLE |
Ga0187855_101121204 | F011771 | N/A | MIDSKAGPKGENGTASGPTRFGGLDQLDWLMIVISVLLGTIAKQHHFLDLSDRFLEWVLPFLLMVAGYRTRHKVTELIESWRAKAKSPTSE |
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