NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187855_10127588

Scaffold Ga0187855_10127588


Overview

Basic Information
Taxon OID3300018038 Open in IMG/M
Scaffold IDGa0187855_10127588 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1525
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033372Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0187855_101275881F033372N/ARGLSFVVSAGWNPGLSELLPVYADAHARAKMDTVESLTVYQADSGEWSPNALRDAVWYVHRSGLQSPGYFHKGEWTRVKMSQASRRVDLGDPVGPGRFALYSTPELSEVGRRLNNYDVFTYAYVSGFRTIMAITLMALVPLPQGLSVRWFRNVFRRNRLPVDGFVSAQILGRSQGNRLALTVQVVYRERRDYWIHGVVLATAARMVSESQGVQAGVHFLADAVDPITFMSELRKAGVELTEIFRPCE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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