NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181601_10056071

Scaffold Ga0181601_10056071


Overview

Basic Information
Taxon OID3300018041 Open in IMG/M
Scaffold IDGa0181601_10056071 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2740
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007621Metagenome / Metatranscriptome348Y
F017047Metagenome / Metatranscriptome243Y
F017755Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0181601_100560712F017047N/AMLDLTNRRFEMNTETDYKNELVQTLWDLFKEVHGVRPRGMGYEKYSVADLEWEIAMLQRQLEADIRWEREQEDRAINACMDCGASDIATAMRWLEDAYEMEWV
Ga0181601_100560713F017755N/AMGRHKPIRSSWKAMDTQAFSRSYEPETRPEFRVYVTGQADAMMATYRKTKDKADALAILDSLL
Ga0181601_100560715F007621AGGAMQNSSTQIVPVVNNTLEAEGFALAKEWKSICKADKARFTKSVNADGFDTRLGKLMLKLKAEGGDRIASARLKDCGIAGIDKRRRSEAMWFVENEAACRDFIKASKKGFTSLTALQAAMKKADKAATEPKADKPVNSEAAEKSNVGLDSEAETAQAKSPSDIALDALVQCEMNGIAIKDFMLALKEQLEMLDETKVAA
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