Scaffold Ga0187887_10025391

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187887_10025391

Scaffold Ga0187887_10025391

Overview

Basic Information
Taxon OID	3300018043 Open in IMG/M
Scaffold ID	Ga0187887_10025391 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3778
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000828	Metagenome / Metatranscriptome	872	Y
F057549	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187887_100253913	F000828	GAG	VVAIEGDRLWIRGILSGDVLAIVNPEPETPLTHDDYPLGKLIALTDPSAVPLNDSN
Ga0187887_100253916	F057549	AGGCGG	MPLAGKLISSAPQSRKKSRKTFKISDALNRRLNTYAQVAAAAGVSVLALAGASEAEVVYTKTYQVTHTGFPLYIDVNNDGIKDFMLRTLYYAGTSGLEIGLDASGFSANLVAGRRLRSSGGYFFSAASALHAGASIGPKGNFSVRYPFMAEELFAKGGGSQY

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