NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187887_10136098

Scaffold Ga0187887_10136098


Overview

Basic Information
Taxon OID3300018043 Open in IMG/M
Scaffold IDGa0187887_10136098 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1474
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004185Metagenome / Metatranscriptome449Y
F006683Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
Ga0187887_101360981F004185AGGAGGMSLKKEFIRDANRKIIGSTTTGYVGSFDTLVRDEHEHVIGRTSESFGTTRDEHGKLVSINTADAGLLIGKHNKE
Ga0187887_101360983F006683GGAGGMNRPDLAVRQVHLRVNKIAFESVRVRHDHRSRDFDIVIDDPHIGRFALTAAVSSLELRDEDSDWRQVTLDELKKILAEAAEQPQVSETAERESFNRLVAEGEHIMHAEIALFRAGIPFLQLPFQQNKFVSNLFMVLNLSKAKACLQRAGFQPKVDSETVLFDSRNGQPIQLIQGRYGLPRAKS
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