NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187890_10145635

Scaffold Ga0187890_10145635


Overview

Basic Information
Taxon OID3300018044 Open in IMG/M
Scaffold IDGa0187890_10145635 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1359
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001432Metagenome / Metatranscriptome696Y
F017529Metagenome / Metatranscriptome240Y
F071728Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0187890_101456351F071728GGAGGMNRPDLAVRQVHLRVNKIAFESVRVRHDHRSRDFDIVIDDPHIGRFALTAAVPSLELRDEDSDWRQVTLDELKKILADDGELADATEEPQASAERESFSRRVAEGEHIMNAEIALFRAGIPFLQLPFQQNKFASNL
Ga0187890_101456353F001432AGGAGGMLKKEYVRDGKRQIIGSVTSGFSDESAVVRDGDNKISGRTSERYDTTRDDHGNLVSINSADPGLLIGKRK
Ga0187890_101456354F017529GAGMPAEAIECPLCLGEGKLKRTEVLDRLGVKDFARVAQLSAEEAFRLLLQKHHHDEQNVWARFETELT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.