NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187851_10156064

Scaffold Ga0187851_10156064


Overview

Basic Information
Taxon OID3300018046 Open in IMG/M
Scaffold IDGa0187851_10156064 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1379
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004581Metagenome432Y
F014350Metagenome / Metatranscriptome263N

Sequences

Protein IDFamilyRBSSequence
Ga0187851_101560642F004581AGGAGMMQVEIYHGHAGLFQQMANHIELSMVPEHRTENGGPDPITTNDITLATTLFNSIYGSPAGKEAILALLAGLISGEERSQTVRGLFMMTVGCSEFDQTVSYTILPFPGEEMETAKLLKAAAAYSLQRGEAHPRAIPPPSRPRTRLER
Ga0187851_101560643F014350N/AQAEVPQRGSYLREKDGYDALSPEQKAACDKDFQTHLDRRTRPIDVRDGETREDALLRAKHEYCAARQEHTLHHRRLAVTMLASKINCLNDKYTRDSFSLLNPDVAKEFMATAFYHHAAATKGLKSFDKDVFATCRRAALREFSALAGGVETGAAGTKDFNGTFAINIERPPIGATIQNLRIAVKPLPGKREELAAIFGKCAWYHSNQSGRTPEEREQRRAARTTTTQDLGR
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