NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187851_10211525

Scaffold Ga0187851_10211525


Overview

Basic Information
Taxon OID3300018046 Open in IMG/M
Scaffold IDGa0187851_10211525 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1148
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F038518Metagenome165N
F066387Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0187851_102115251F003764GAGMQIQEDSTYVLDENPAALLTGAEIEAAALHRCLKIARLWSQSRALSQSRHDEMIEEEQRIANLYAATLLEIGCAFGIEIADELKVRVEAACILDPWECPPAEQGLLFPIPRDSANAASPARARK
Ga0187851_102115252F038518GGTGGMCFGMLDLDEQSTYRLGSYPVKVMRWIRHLIFALHVERRDVQSRIAELEQKVAVWSQIIGDAIK
Ga0187851_102115253F038518GGTGGMRFGMLDLDEQPAYRLGSYPVKVMRWIRHLIFTLHAERRDVRLAIAELEPKVAALSQIIEDAIK
Ga0187851_102115254F066387GAGMQIQDDSTYVLDENPAALLTGAEIDTAALYRCLKIVRLWSQSSALSQSRHDEMTEEEQRIANLYAATLGEQFVMTRYLARDILNKC
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