NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187859_10090993

Scaffold Ga0187859_10090993


Overview

Basic Information
Taxon OID3300018047 Open in IMG/M
Scaffold IDGa0187859_10090993 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1605
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002261Metagenome / Metatranscriptome577Y
F003186Metagenome / Metatranscriptome502N
F023143Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0187859_100909931F002261N/ANSIMQETFGEPVLYQPVESGAAVGSPLTITAVRHARPPEESGTMAGFEEISVNPSDFANPPAKGDWVTAWGAQYVVTTLRQPDAYGMLNLALLKRGS
Ga0187859_100909932F003186GGAGMINPKAILGEWVTALRSCPDLVTAIGGDGNNIRPFMEGLADHNNLRLAILQMPPGSILVAWNGTTPRRLTGGALHFAHRFSVYLRAPEQNSTATYADLFWLLVSAIPAGAPSWSSLLHFQIDPDCYPMDLDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0187859_100909933F023143AGGAGMDWVFMESPSGEVKEVEATAAALTPLMVAGWRQVPAPVATGPKPAAPVEEKK
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