NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187859_10095367

Scaffold Ga0187859_10095367


Overview

Basic Information
Taxon OID3300018047 Open in IMG/M
Scaffold IDGa0187859_10095367 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1565
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004185Metagenome / Metatranscriptome449Y
F006683Metagenome / Metatranscriptome367Y
F015081Metagenome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0187859_100953672F004185AGGAGGMSLKREFVRDGQKRIIGSVTTGYVGSFETIVRDKQNNITGSTSERFNTTRDEHDSLISINSADAGLLIGKHK
Ga0187859_100953673F015081AGGVHPYYSGDKEIGLEDLIQEQRSLARSKNPFERVVGSLCIGAILKEQLVRLPNSAISRLMTDYVGSDLNLLGPESVVVEVASERLIEKYGTSMVCPECGEGLRRTDE
Ga0187859_100953674F006683GGAGGMNRPDLAVRQVHLRVNKIAFESVRVRHDHRSRDFDIVIDDPHIGRFALTAAVPSLEVRDEDSDWRHVTLDELKKILADDSELAEAAEEPQASETAERESFNRLVAEGEHIMNTEIAFFNAGIPFLQLPFQQNKFASNLFMVMSVPKAKACLQRAGFQAKFDSETVLFDGCNGQAIQLIQGKYRLPRTES
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