NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187859_10143719

Scaffold Ga0187859_10143719


Overview

Basic Information
Taxon OID3300018047 Open in IMG/M
Scaffold IDGa0187859_10143719 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1263
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005112Metagenome / Metatranscriptome411Y
F025427Metagenome / Metatranscriptome201Y
F039911Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0187859_101437191F005112AGGAGMSPVAKYKLFWAGCIAAFCGLAFWKNSQSYPRKSPLWRLGKSAIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSQLAGIVFEAVAVLGVFA
Ga0187859_101437192F039911AGGAGMKYTIAALPAVVVAIAGYFGIRHFTRKDLGFTPVKRYASKLANTLLHSEATAAQEAGVSPAA
Ga0187859_101437194F025427AGGAGMQPGEMEELLASLRTCPIQKRGLFRRLFKLYWKKLLFIALMLVLPGGLVVLFLCAAAWALNWEHEMTAYMDETYKKWKEEHDVHSE
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