Basic Information | |
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Taxon OID | 3300018047 Open in IMG/M |
Scaffold ID | Ga0187859_10213849 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1030 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007233 | Metagenome / Metatranscriptome | 355 | Y |
F033134 | Metagenome | 178 | Y |
F037842 | Metagenome / Metatranscriptome | 167 | N |
Protein ID | Family | RBS | Sequence |
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Ga0187859_102138491 | F007233 | GGAG | MANRKQKEHQRQLNLDTFSDGIKGKVLEAVSISNELECRYISLEFEDKTELTISLDTRLSGKLELFDCKTGDHRLVRKIGLIPDDAPVWRPKD |
Ga0187859_102138492 | F033134 | AGGA | MKQEQESKQLITFNSLHIEVLGPRELGNSQLTIRGVTEFLHAVEFDVGKLLRERAEMSPLLEGFRLRFG |
Ga0187859_102138493 | F037842 | AGGAGG | LKQKTVKARGEGVEYPALISKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIAFSNDPELSTLEGGNIVRWRQLKTRPVTRRTARK |
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