NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181606_10179123

Scaffold Ga0181606_10179123


Overview

Basic Information
Taxon OID3300018048 Open in IMG/M
Scaffold IDGa0181606_10179123 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1249
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001746Metagenome / Metatranscriptome643Y
F029744Metagenome / Metatranscriptome187N

Sequences

Protein IDFamilyRBSSequence
Ga0181606_101791232F001746N/AMRKNHNKLYYGKYRHKTVFRLPGSLMFYPTTDEHLLHLQKEYQHAPDMCHLASFIMANRRNVKFRMQDRKTIFYSDLDKSQELIERFWDFWIGSETVDPKFTNLGKDTVGCTRLPHGKYKYQVYLKKDAQVLMTDAQKKNLWEFLERNVDDCLVTNYNIIDFLENKSPYCFGGYFYVKEEKYLTPIYMLAQQAIDKVIQFRKVKNGSNKKTTR
Ga0181606_101791233F029744AGGMEAIKKLRDKKIFNDQSIVESMIQKNWMGSPVIKRSLLRVRKVREDDCVC
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