NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181572_10168289

Scaffold Ga0181572_10168289


Overview

Basic Information
Taxon OID3300018049 Open in IMG/M
Scaffold IDGa0181572_10168289 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1432
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007531Metagenome / Metatranscriptome349Y
F015099Metagenome / Metatranscriptome257N

Sequences

Protein IDFamilyRBSSequence
Ga0181572_101682891F007531N/AIKDFVEHTGLTERHEIIHGTLYVTLKDPKGFDHFHKTIRTFFKEEVDNEGGVNMYAVGDEFAFDFVPEDREAPVFCDEKFSGKEEMDPADIDDKIKGVWSEFAEEEMFNNIDLTDEQESDLDVLMNLEAESKRGK
Ga0181572_101682894F015099GGAGMTHTSKNWQVIYRHKDSLAGCFVWAPDEAQAEKKFKARKEFEYDPEFDRNPQEGNIRSIYEYVAPKPKASRSKMDELEAFVKFPQFYPFLKKYDAGDEKALAKQIPLTPDNIAIIDGIAKVIPITRRYRGPRTRGGFMRECHKQDAERVSIYAR
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