NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184620_10105510

Scaffold Ga0184620_10105510


Overview

Basic Information
Taxon OID3300018051 Open in IMG/M
Scaffold IDGa0184620_10105510 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)873
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024928Metagenome204N
F080641Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0184620_101055102F080641AGGVTVRALADLGQGARGRIVELRLPPGRRTAPGSPLQPGATVYVAEATGGRWLHVRIDYREYSIPLGVAAGVLVELPERAQPPSAGDAYAVLVSRLDRRSWRVRVIDRSSGVVARSEWFEDEAAARQRHRELAADAGALDAGAFRARYRLP
Ga0184620_101055103F024928N/AHGRYSEGDHAEWSLSGTCEVTVIARVLCATAQSEQAAVTMAELWGEQVGRFERTAPGFQGAVLLREGARLLAVSCWDGEGTAEAALEPLLDRMASSELDALLAKPLSYRFRTL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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