NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184626_10010629

Scaffold Ga0184626_10010629


Overview

Basic Information
Taxon OID3300018053 Open in IMG/M
Scaffold IDGa0184626_10010629 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3605
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025352Metagenome202Y
F035249Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0184626_100106292F035249AGGMLIALSLLSMWKENRQGEPLNGIIWFSLAIIGFCAAIALLAAYVQKARSLEKISHRMEAISTNPEASKKYT
Ga0184626_100106295F025352GAGMSSALDEFKKPIEEWARALVDGKPMENLLILYKLLYALGCRIDGIDFEIDRLCV

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