NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184621_10081589

Scaffold Ga0184621_10081589


Overview

Basic Information
Taxon OID3300018054 Open in IMG/M
Scaffold IDGa0184621_10081589 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1125
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014522Metagenome / Metatranscriptome262Y
F076408Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0184621_100815891F014522GGAMRKFLITLAIVVGCFAAVSAMWIFGGQQLSLFIDRHKTIETASARINLISYEGSGTGGVLTVNDLGLSLPDASPKISPSIGSTKDG
Ga0184621_100815892F076408N/ALIELAKIYDVELVPRPFTGETIAHGVVPEFLRAIGLDPSQFRDTNVRRNEAAGPFTVSVARGVMRLINGTGKRLKWLQAVRCGTKLATYLNDKGLADAGYRGLTTTLARHIETHWRSDNDAFAQRVWGAPWSEIFAADIGREFTPNDFAMCRPDETTERRLQQAICEMTPIAERVLLDPALAVEAPWNDLLGRGGWTPREADSKNLAPEVSRSLR
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