NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187858_10072156

Scaffold Ga0187858_10072156


Overview

Basic Information
Taxon OID3300018057 Open in IMG/M
Scaffold IDGa0187858_10072156 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2408
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053734Metagenome140N
F058622Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0187858_100721562F053734AGGAGGMGNVSQLCIQGLSRKQNRAIDAILKSGAAGGPSRLYKSIQQIREQDPSLSLRRLLKRTAVLQLSSWQNPWMDGEKNYVLEHAREFPVADLARRLQRTQSAVYQLLWKYRESAKFQDGYTQKELAEALHVSPRKVRGWVRLGWLTLYQDRIKDRSLVRFLEGHSDEIDAKRLEGDVRLWLLDLGFHEDAIHSVRWFRDRKQTMRVHVCDRCGRKVHGNAFYRHLKACTKGGTCLTKDTDNRRML
Ga0187858_100721563F058622GAGMRTQGRIRSLNSLKRRIESETRSEAEWQARKVPWPTLLEYREQYIKWEAFTLWVHAIEEAEHQTPDWLRRVVERRCGGIESEKSPKLWKCLDTWKHKTVFAKPNREGWMRAVGFFAARDLAYARNWAYWGYCERQWSVRRPASYPSFDEWKSAAEVCPGEVLDSSGLRKERKALIKEAARCGKERLERAIGTYVDLETFAYWLRPIVDHGLPLSGRVLKEFQSRFPSLEMCDDWNWDQFWARLRHLHFQEAEAQGWLDAVVYTAELHPRRIKVIDYWLLYWASQWPKDQPALYPRFEEWRCKAESYVPNGCDPEGDSSVPLQG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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