NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187858_10280351

Scaffold Ga0187858_10280351


Overview

Basic Information
Taxon OID3300018057 Open in IMG/M
Scaffold IDGa0187858_10280351 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1061
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033134Metagenome178Y
F037842Metagenome / Metatranscriptome167N
F065986Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0187858_102803511F033134AGGAMKQEQESKQLVTFSSLHIEVLGPRELGNSQQAIRGVTEFLHRVELDVGKLLRERAEMSPILDGFRLRFG
Ga0187858_102803512F037842AGGAGGLKQKTVKARGEGVEYPALTGKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIDFSIDPELSTVKGGNIVKWRELKTRPVMRQVARR
Ga0187858_102803513F065986AGGMIRKGKEVRYGSVRIDLIGPIELLHNREAKGAAIDFLRTEILASKDWLKDCARITPSLKRFRLVSIRE

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