NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187766_10013042

Scaffold Ga0187766_10013042


Overview

Basic Information
Taxon OID3300018058 Open in IMG/M
Scaffold IDGa0187766_10013042 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4752
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000906Metagenome / Metatranscriptome842Y
F031195Metagenome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0187766_100130423F000906AGGAMFSRFAAHWPPTIRNLSTRTRYLTIGAAAVLPALLISVPAGTHSGASQDGGLVACAYPLATHDVPAAEYQKIRAEFAGSRWPDLRNAGTAYVDLATQLLTARGTDGYQTVWFYQRLSAACAKHGQPLNGST
Ga0187766_100130424F031195AGGGGGMNITLTAIHSLHGTGWVIKARQADARLAPGGRKRPGEAGTRAAQGHRAGEAARWQRILDLLDPDKHCGAWSPATCQGHPVVCTRAPHDARDEHANAETGWRWSDESPESRRGRR
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