Scaffold Ga0187766_10013946

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187766_10013946

Scaffold Ga0187766_10013946

Overview

Basic Information
Taxon OID	3300018058 Open in IMG/M
Scaffold ID	Ga0187766_10013946 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4586
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Colombia: Department of Meta
Coordinates	Lat. (^o)	3.8381	Long. (^o)	-73.3194	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007079	Metagenome / Metatranscriptome	358	Y
F054270	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187766_100139465	F007079	GGAG	VDPYDVAFPDPSEVAPHAIAFARMMFAHAAFEREVRSLVDVINPQKPGFGERPENQWTASESGTGKIIILIKQHRGSGLPQSEQIKNLLNEAIHPCRDRDFLAHGTWCCFNRRSLTIEVRRGQRWGQPELPPENRAYAVRDILKLARKFKDIQVELDKIRRSLEPKMSEAELRAASSFLRCAS
Ga0187766_100139467	F054270	GGAG	MGRILRTDRHRAQASPKRKSQGEIEELREENRRLREIVAHLSKLAVERITQTVEPGEPSASDPRAGR

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