Scaffold Ga0187765_10000513

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187765_10000513

Scaffold Ga0187765_10000513

Overview

Basic Information
Taxon OID	3300018060 Open in IMG/M
Scaffold ID	Ga0187765_10000513 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14261
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Colombia: Department of Meta
Coordinates	Lat. (^o)	3.8381	Long. (^o)	-73.3194	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007079	Metagenome / Metatranscriptome	358	Y
F054270	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187765_100005138	F007079	GGAG	VDPYDVAFPDPSEVAPHAIAFARMMFAHAALEREVRSLVDVINPQTPGFGERPENQWTASESGTGKIIILIKQHRGSGLPQSEQIKNLLNEAIHPCRDRDFLAHGTWCCFNRRSLTIEVRLGQRWGQPELPPENRAYAVRDILKLARKFKDIQVELDKIRRSLEPKMSEAELRAASSFLRRAS
Ga0187765_100005139	F054270	GGAG	MGRILRTDRHRAQASPKRKSQGEIEELREENRRLRELVAHLSKLAVERITETVEPGEPSASDPRAGR

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