NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187765_10057961

Scaffold Ga0187765_10057961


Overview

Basic Information
Taxon OID3300018060 Open in IMG/M
Scaffold IDGa0187765_10057961 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2013
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076721Metagenome / Metatranscriptome117N
F098427Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0187765_100579611F098427GGAGMAKFVPLTLMSKTQKVTLYLNMDQVRYLRPQTSGGTSIYFGDEQSVMVEEDAATVANMVRGR
Ga0187765_100579613F076721GAGGMKVSEPTVKRWGNAFSAVVGVIVLVLFLIASVKVIAYLVYAEGTVESYMSKNCSQSEQSGLEAKWEYGEGCLVNIDGRWAPERKVPK

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