NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187765_10144647

Scaffold Ga0187765_10144647


Overview

Basic Information
Taxon OID3300018060 Open in IMG/M
Scaffold IDGa0187765_10144647 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1337
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003697Metagenome / Metatranscriptome473Y
F017517Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0187765_101446472F017517GGAMMFLDCPAYLDSSRAARCGLPAEVEYRYAIRSTDGPLESVKIRCPRGHCFNGPLESLLWDQAPAAASPLRLRSQNA
Ga0187765_101446473F003697GGAGGVTSSEASVPAGAAKAGGTASTRLFVRQTSGLVRELGIPAATGISLASVAVVNTFINFNAGLTDFTKSDMYLPLVAGAVIWLVAMFA

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