NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184619_10105891

Scaffold Ga0184619_10105891


Overview

Basic Information
Taxon OID3300018061 Open in IMG/M
Scaffold IDGa0184619_10105891 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1266
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011234Metagenome / Metatranscriptome293Y
F017836Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0184619_101058911F017836AGGAGGVRDFAFKVNVVAVVRVRADDESVARKVVPTVLGPPGPVEIRLVNENHAAMAHHATVTDVDFSIGSVKPLKKSG
Ga0184619_101058912F011234GGAMTLQVIAGPRGRIATKFTPANIQKIKDWVAEGISREEIARLIDVTVGSLQVTCSRLGISLRTRQYSNGSGSHWVGAVGRPHIASHPPMIGHMRVDGQFQISLERDGMRRATALPLTARDITQLALAAAVRNVGMTQLLTEVVTTAIKKGMIEEILRPDGKLAAALT
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