NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187784_10011906

Scaffold Ga0187784_10011906


Overview

Basic Information
Taxon OID3300018062 Open in IMG/M
Scaffold IDGa0187784_10011906 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7012
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023021Metagenome / Metatranscriptome211Y
F023506Metagenome / Metatranscriptome209Y
F074282Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0187784_1001190612F023021N/AMGKPEAVAIEGWLKKRYKLLFLRINERTNHAFAIVDLPELPLNLSEQPPDCKLSLSTPRQAESDFIRMSDFDQGTTFFNSNGWQKRLQEIARN
Ga0187784_1001190613F074282N/ALEKDDAIFYALLRMGHECTHAIIPHPHLLSKKIESAWLIEIEHDHNDLGKHGQYTFCYKIVDDPKTAVGECRKGLNDLT
Ga0187784_100119068F023506AGGAMSKESRHVKLRCLECKAKFDSKYDAFDMSGITSVGQVLDNFIFCPKIRRRGCGKRVSVVVADIR
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