NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187784_10198506

Scaffold Ga0187784_10198506


Overview

Basic Information
Taxon OID3300018062 Open in IMG/M
Scaffold IDGa0187784_10198506 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1637
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000249Metagenome / Metatranscriptome1459Y
F000534Metagenome / Metatranscriptome1044Y

Sequences

Protein IDFamilyRBSSequence
Ga0187784_101985061F000534GAGMPQEISVSYQAIKSKVYRLIDTLVVGEKTESEVQESVRRWWSLIHPADRPIAQKYLLMVLGRSSSALNAMEEALLSASAPEPIPHQLAAKRLRLIDRVVKESGARPAV
Ga0187784_101985062F000249GGAGGMKTWSVLLLVVVLASFAGAQIATSLGSDGAWKSEVPGERMFFPHDMLWGWAGFDLAPPHNEIDPNLCAGNAGAASYGGAAAPCSMFARYMLSGVLEVRPFGKGVLRRFMVFGAPTFLFGKNLPKTLYTWSPDAIGIEHSWGAGIYLNKGFEFRVTQHFLFDRLGARDTNLGPADLGNNGPWGRYMTVGVRKEFGTRRW
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