NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187773_10120267

Scaffold Ga0187773_10120267


Overview

Basic Information
Taxon OID3300018064 Open in IMG/M
Scaffold IDGa0187773_10120267 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1320
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013198Metagenome / Metatranscriptome273Y
F069759Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0187773_101202671F013198N/ATVKKYFPSALRKANGKYRTAKRDRYTATLYVPDANGNAIPVKTHSSRERKQLSQYLRGLGRYLGGDRNALSAWHGKNVAGVDLVTDGRTIKTIEPALSEFSLYRAFNGGTA
Ga0187773_101202672F069759GGTGGLIDQQPIRTARRKALREERLGSDAFCLLCGHGCLESLTQVSRKWLEDRGIPKDRIDRLLEVHHIVGEAHDPDLTVTLCLNCHREITEGLAREGVSMRPEKNLRKLIVLVLRASAVLFDFLAASYRKLAGVLEDQSESE
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