NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184618_10030813

Scaffold Ga0184618_10030813


Overview

Basic Information
Taxon OID3300018071 Open in IMG/M
Scaffold IDGa0184618_10030813 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1842
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F019913Metagenome / Metatranscriptome227Y
F090360Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0184618_100308132F000280GGAGMARRRMPARPLAGYRDVGPDVRHSRRNHMRAWIILAFLVAIYLGWTLTVYFFEPGLR
Ga0184618_100308133F090360N/AMAAAPPFVSYSTMSEASVPSSEWSYLYGSLQAYKAHVQEYPGCQKMELFASIDDGGAMRVHCYTVWDTPEQLEIFLEIGYTFERLLADLELQGVERSLVMEKLF
Ga0184618_100308134F019913AGGAGGMAMPSGESPQHADQFYQYLLAHHETEHPVKTWHVEWMSLAWMWGFVAALSLILIWWVRQYRTTRQKQRIYSVDDWSGFTSELAGPSTLFFLLLTAILTGFAVALIVGHLVNGQIF
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