NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0184618_10070943

Scaffold Ga0184618_10070943


Overview

Basic Information
Taxon OID3300018071 Open in IMG/M
Scaffold IDGa0184618_10070943 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1313
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057721Metagenome / Metatranscriptome136N
F090226Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0184618_100709431F057721N/AMHGNRRYVKSTWIGLLALLALASPARAEVVTQKADRGVLAVAADGSPWVAYTVGRGLYASLRGSQGRWTAIRLGRLPANSGITLAGIQIGERPHRHVNVLVEDGQGRWIVLARGSRLTTIARAAPGSSFGPAGLALDAGGRPAIAYAVQRKTGQTFLRLVTFRADGRRQTRPITLKGFPRSDLPPAAAPVLVGGRLHVVETYTSAAIDWGPTGHGGWEGQYLFFSRLGSPQGRVGAVSLPSTLWSAWTQVYPQAEPGDIVVLLNSSATTQVTSTLTHGIFVSIARGDEEQPEIGAYDWVGLGEDWFVYAGLILRGTGSEAWQLDGRLEGFTIGKLGTRQLLLSREGGLEWFRSPTALPPVRIGM
Ga0184618_100709432F090226GGAGMKFLMLVCWDAEKMDAQTEPESSNDTADNESFPWLDDLQARGIWVTG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.