NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184618_10113808

Scaffold Ga0184618_10113808


Overview

Basic Information
Taxon OID3300018071 Open in IMG/M
Scaffold IDGa0184618_10113808 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1075
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037137Metagenome / Metatranscriptome168Y
F061299Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0184618_101138082F037137AGGAMDELTREQEEAVAATVGAIQRIAMAIVALPKEQRTAHYALVRRQFEAAITEFGIEGAMGHAWLSSTIIGIQTL
Ga0184618_101138083F061299AGGTGGMSDSVPDGDQQQSLQTEMKERAELISVVLTTVLEEEGYASAVDQARRLFTHTTPAQMEQMKPHFSSLALEFMILAGFFED

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