Scaffold Ga0184635_10000590

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0184635_10000590

Scaffold Ga0184635_10000590

Overview

Basic Information
Taxon OID	3300018072 Open in IMG/M
Scaffold ID	Ga0184635_10000590 Open in IMG/M
Source Dataset Name	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9393
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9195	Long. (^o)	-106.9496	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021162	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184635_1000059010	F021162	GGA	MTRGLGEGITASRKTLRLNDLFVSQTHDFRISMMFMLKIVLIAGLFGAVACAPAVVTPLPQNLHQIAVLPTYQAGTVEARTGAESGPPVLQNMTVGDVLAQQARIRLAEKGFEVISPSAVKVATKDRVPTSPEMAAQILREANLDAMALYIEVRRWEPTPDSRGMKADGVIVALDAVMVDPKTGGVLWQVHRPSRPVPVYGVVLTGQANVIVAETVMREIFH

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