NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184635_10000870

Scaffold Ga0184635_10000870


Overview

Basic Information
Taxon OID3300018072 Open in IMG/M
Scaffold IDGa0184635_10000870 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8226
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030494Metagenome185Y
F035366Metagenome172Y
F060113Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0184635_100008704F060113N/AMIWFFERLGERLQCEIRQAASGAGYELVWTSNDGRIHVELSDDASELIRRRRALEHWLRLDGWVRPGRITPTHPLRTERTRKTDVPMH
Ga0184635_100008705F030494GGCGGMERVGPGGRDVMRRRADMVGTPVFWLTIVVTLCALVPIALFPRVRGWVGCALLLMWACFFTANAIRSRRVHSIISAPVYLLAAALLAGTAAGFIAVDIWMVWVLGAGIIAANLSERFAGKYL
Ga0184635_100008706F035366N/AMTITNKNDANKAAVLERLSAVRAALKNEPESPALTRALDQCDRLELAINQFHAEGLRFAAFTLLRMVFGPGTGFTEPVHIATQNLKNTLDAAGYPH
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