NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184635_10017731

Scaffold Ga0184635_10017731


Overview

Basic Information
Taxon OID3300018072 Open in IMG/M
Scaffold IDGa0184635_10017731 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2577
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000573Metagenome / Metatranscriptome1016Y
F006193Metagenome379Y

Sequences

Protein IDFamilyRBSSequence
Ga0184635_100177312F006193AGGAGGMPDTILDGSGEQTPGRRLLDGTDLEIAYNLLGDDLVVRVNKAGVQVFGVVLENAGKAMTAQQLLELKTEKSDLVVSIAPRADTVANVGFALGRVANKLVKAAREKMNKP
Ga0184635_100177315F000573N/ARLIVSVGIGGASFAIMLGIMILSILYDRELEPVITLAFNAGRDLIAGLDAMVAGSRWGQVAVNHLRERVNMTHVVLSLPAIVIAAIVVGIPFNWLLGGTRSALQRIAIALVSVPATVVLAVALFTFNALVPESYAALLRFADWLWQASLNALSAAGDTIPGARKLANAARQGVSGHHYVIMALCSMVASFLVNALFAFATRPNPVEK
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