NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184640_10162181

Scaffold Ga0184640_10162181


Overview

Basic Information
Taxon OID3300018074 Open in IMG/M
Scaffold IDGa0184640_10162181 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1001
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003280Metagenome / Metatranscriptome496Y
F021280Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0184640_101621811F003280GGAMDMPAKIEFLKSAIASQQITLRLQTALAAMLFVLGITVVILSFVNPGLILAETLKTGQTLGGTVVAASGFIAIFFSRRDKVVALRSLLHSYQHQQVGGLSPDAKLDQYFDQYFAMVLGG
Ga0184640_101621812F021280GGAGGMKVSTSLTPGDQLPVLLERIERREKSARSRAVLYSLLPVALTVVLLGYTASSVRNAQKQVDALKTEATTYTTQIDTLKKNAETYKTQSQSLQGDAENYKNQVTELQAQLAEAQKTLSEAVNLSRALRTIDYVNAKELASRFPGSESLLLDILDLRQRRIK

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