NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184609_10212962

Scaffold Ga0184609_10212962


Overview

Basic Information
Taxon OID3300018076 Open in IMG/M
Scaffold IDGa0184609_10212962 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)901
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001528Metagenome / Metatranscriptome677Y
F008431Metagenome / Metatranscriptome333Y
F037974Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0184609_102129621F037974AGGAGMPNMNHATDILRVKQIVIDEEGNVAKRFPRIDAEGQLKNTLLFAMHPEICVLSMQEP
Ga0184609_102129622F001528AGGAGMSEKNQIVVVLIVALVLGAFVDRITALKIVAGVVLLWTLQNQPTVFECIRTLFSFVQRRPSVREYRGGVTTVRAS
Ga0184609_102129623F008431N/ALASANRNGDVPTLGRECATEAEAIIEAFREKVSLYKVTEFQTRADIGRSGEPILRKETLKKNNPAS
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