NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180433_10280238

Scaffold Ga0180433_10280238


Overview

Basic Information
Taxon OID3300018080 Open in IMG/M
Scaffold IDGa0180433_10280238 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1321
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015211Metagenome / Metatranscriptome256Y
F015342Metagenome / Metatranscriptome255Y
F025285Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0180433_102802381F015211N/AMPMNDISYRQGLRTKGFQTTVPTTGADQTLSLSGLAKQFEGILLTSTTSAAPGTIIDPAQLR
Ga0180433_102802382F025285N/AMSQVSKLNMVNAKLGATMPGQQTTRYVYDTVTADLGQTNFNFFQTFAGKTDLQSNLTTNKLDSSESMVIKSIYVATNLTQGMSGHSNLNITVGNQVVLKDFNLAFNATNRGVSYDRLHSGFTTGSFLEIRLLTDIVIPPQVNFKATLELAEGGTLEGESITLGLKGYGTIFSAGSTF
Ga0180433_102802383F015342N/AVAANMPARNIKGNVQAQDKILYVANKLGLSSLKYMQATTRVVYDQATTAATQQTLFEGAAGRSFPLTNLGANGNQFQVDEALLVEKIAFFQPDADDGQNFAASGTGLSYKFDLIIGNKTVMKDVVVERGGQQAFFNDGAAESSVLDLEGVGILIPPQVEFKIEVKPFVAGTRAASSQRVGCYLFGTGVLLNFNTSI
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