Scaffold Ga0184625_10000396

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0184625_10000396

Scaffold Ga0184625_10000396

Overview

Basic Information
Taxon OID	3300018081 Open in IMG/M
Scaffold ID	Ga0184625_10000396 Open in IMG/M
Source Dataset Name	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16089
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (70.59%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9195	Long. (^o)	-106.9496	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051410	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184625_1000039611	F051410	GGAGG	VGRVLRILPGLVLMVYVVPVYFKVRAQVAAGSLLLVLGLIGLYVLIHILVSRRIFSFGPSLGTVVASGLLIALYVAGTSALPIVSHGKGQLAAVTFLGISLVLAGVRSTPGCELMAIPDVLLGKHTELACLIFSPLDRLERKLRSKRDL

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