NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184625_10254696

Scaffold Ga0184625_10254696


Overview

Basic Information
Taxon OID3300018081 Open in IMG/M
Scaffold IDGa0184625_10254696 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)919
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000667Metagenome / Metatranscriptome949Y
F015101Metagenome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0184625_102546961F015101GGAGMSLKGWVLNKVNRLVTRVDLPPRATPLGQAIMRRTGEPRAPGVRANGNQDTLPRPQHLGAYAPLVAAMRDELEHFVTSHVRMHLAIAEQDRYLLTSIEIECVAGDESRELLQRFVREFKPEQIKHYLAKEVIGRLPNASAIDLAHFGGLNAAPAEGVDEAYGELLAELRRTEPRAGQ
Ga0184625_102546962F000667N/AMRRTPTVNGRPSDVSGGHVEAPLVWTFDGPFATCLQDMEDTFRRAIVQVGDVSRIAMQIDLSLPALKPRLDAGEAIQPAWGHFIDRLTQRYGLPAPPRVRHLKVAGPLATMVIAYRS
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