NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184628_10043263

Scaffold Ga0184628_10043263


Overview

Basic Information
Taxon OID3300018083 Open in IMG/M
Scaffold IDGa0184628_10043263 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2264
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004067Metagenome / Metatranscriptome455Y
F011411Metagenome / Metatranscriptome291Y

Sequences

Protein IDFamilyRBSSequence
Ga0184628_100432631F004067N/ATVDDERPPICLACGVTMVPTALSAREGHDGDWICLECEVTGEPDPASGA
Ga0184628_100432632F011411GAGGLTSDRFDRFLTLAGALAGLMFFVALILLWNDPASETGPAETFSFWQDNRGQHQIVALLVAPLIAFLLLFFGAGLQRRLAEGNRDAGHGSVAFGGALLGAMTFAVVGMLEGAMTNAAHEGARETVYTLNQFHSYDWLAWNAAFAAMLLATGLGARRNGMLPTPLAWATIVIGASLLTPLGFFGFILVPVWLIVVGVWLSRGKNTSPVALQG
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