NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187772_10031724

Scaffold Ga0187772_10031724


Overview

Basic Information
Taxon OID3300018085 Open in IMG/M
Scaffold IDGa0187772_10031724 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3145
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016741Metagenome245Y
F045975Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0187772_100317243F045975AGGCGGMPRYEVTVQGRGIALPVGGAMAIGFLRLVQVRARDPVDAEIRAVELVRSDWASSAHAGRNLGDAPCLTISRIGSLHWWHRLLGAPRGYIFFGEDGVQMPAGPSQS
Ga0187772_100317244F016741GGAGMPSFAGAFPELCFDLAAELRATGRSDLARELEASTLKSVSYDPETDAGLVALEAQRELNAVERNVVGQKLGQVISFDGAHYASLQLDNFGRVVAVDLQAPPRELRWKLLRLTPNNRW
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