NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187772_10035636

Scaffold Ga0187772_10035636


Overview

Basic Information
Taxon OID3300018085 Open in IMG/M
Scaffold IDGa0187772_10035636 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2983
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001734Metagenome / Metatranscriptome644Y
F003010Metagenome / Metatranscriptome513Y

Sequences

Protein IDFamilyRBSSequence
Ga0187772_100356361F001734N/AQPEAGQTVINTVIDNENLSAVMEEARKAKPVALDKTVFSLDPSGNTLKVSSPDVTCSMSFNARASSLLIKPVLIEDLPLEELVKLDGPGSIQDNNLDLEVFNGSEWQLREITVGLTLERTPGESAEFHPIAPNAGATGIPFAQRARMIPAVEGAAPVAVERHADVTLLYHLKTEAQPFTKAEFHENIGITPGPDEDWRWSIVEAKGIRPAGVRMAPESLSEPLFGAPLPFVPETNEARPAVQVPRVAGPGDDAEKPKASDVGPAQR
Ga0187772_100356364F003010GGAVKKKKSMLESVPLLIVLGLLAGAVGGVGIGLFQLHQMNQSSTSSTAGK
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