NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187772_11028739

Scaffold Ga0187772_11028739


Overview

Basic Information
Taxon OID3300018085 Open in IMG/M
Scaffold IDGa0187772_11028739 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)602
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000819Metagenome / Metatranscriptome878Y
F001232Metagenome / Metatranscriptome741Y
F059183Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0187772_110287391F059183N/AKPRRTMAPAEIRAVAAQAIAHLHEVAGQLAELSALLGDDEPGEDTR
Ga0187772_110287392F001232GAGGMSAHDDQIRRVVAELEVHVAEAEASIAVLKALLADDEVPGEEDSRDPKPR
Ga0187772_110287393F000819N/AAYYYQEFILGLAAPQTLPMMNVVIALNLSGEGAVSDYKKLLQGLIWSERGHARDLADFLLANGLLTPADLDEARHVAADNERSGVCEIARQRLQYRPRGT
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