Scaffold Ga0187769_10007444

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187769_10007444

Scaffold Ga0187769_10007444

Overview

Basic Information
Taxon OID	3300018086 Open in IMG/M
Scaffold ID	Ga0187769_10007444 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6820
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Colombia: Department of Meta
Coordinates	Lat. (^o)	4.0627	Long. (^o)	-73.195	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038947	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187769_100074446	F038947	N/A	MLATMLVVMVTLTPVHAAAEPSIPINGRYSVLTIKIYIPLTPKWAHDVVLNASIAWNQAQLRYLQNNPTATVYNFVEAVDGTATSTVSFSMPAAYASIAVGWTNYKFAPGTRTSIISTQTYLTPTIFNDAQANNATARRYAFWLALHELGRILGLGSLMDGKDIMEPRYFAARVDEAPQFSTLDLYAVHVLAQGSAPNSVTLPDGVQDQFTPATNFLPNPYSPVALAPIPAVNQFTVQVPGPSIGSFRVRFFRVFVV

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